Basic Statistics
Measure | Value |
---|---|
Filename | ERR1041474.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 14429840 |
Sequences flagged as poor quality | 0 |
Sequence length | 43 |
%GC | 45 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT | 100839 | 0.6988227173690076 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT | 69440 | 0.48122501704800613 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT | 49703 | 0.3444459536626879 | No Hit |
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 14831 | 0.10278007240551523 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 19250 | 0.0 | 24.093246 | 1 |
GTATCAA | 44995 | 0.0 | 20.598955 | 1 |
TTAACGG | 2110 | 0.0 | 15.957347 | 35 |
TAACGGC | 2240 | 0.0 | 14.866071 | 36 |
TATCAAC | 63730 | 0.0 | 14.392436 | 2 |
AACGCAG | 63755 | 0.0 | 14.317152 | 6 |
ATCAACG | 63935 | 0.0 | 14.3057785 | 3 |
TCAACGC | 64700 | 0.0 | 14.108037 | 4 |
CAACGCA | 65305 | 0.0 | 13.98017 | 5 |
TTTAACG | 2470 | 0.0 | 13.631578 | 34 |
AACGGCC | 2500 | 0.0 | 13.616 | 37 |
ACGCAGA | 67305 | 0.0 | 13.5784855 | 7 |
CGCAGAG | 68005 | 0.0 | 13.438719 | 8 |
CAGAGTA | 70495 | 0.0 | 12.948295 | 10 |
AGAGTAC | 70520 | 0.0 | 12.912223 | 11 |
GCAGAGT | 71040 | 0.0 | 12.84375 | 9 |
GTATTAG | 5785 | 0.0 | 12.631806 | 1 |
CGAACTA | 2150 | 0.0 | 12.218604 | 29 |
GCGAACT | 2200 | 0.0 | 12.025 | 28 |
CCGTTAA | 1760 | 0.0 | 11.772727 | 16 |