Basic Statistics
Measure | Value |
---|---|
Filename | ERR1041470.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 13028615 |
Sequences flagged as poor quality | 0 |
Sequence length | 43 |
%GC | 46 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT | 78715 | 0.6041701285977059 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT | 53176 | 0.4081477578391871 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT | 43643 | 0.33497804640017376 | No Hit |
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 13982 | 0.10731762355400017 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 14170 | 0.0 | 26.960129 | 1 |
GTATCAA | 32960 | 0.0 | 20.879854 | 1 |
ATCAACG | 46370 | 0.0 | 14.701855 | 3 |
TATCAAC | 46825 | 0.0 | 14.649866 | 2 |
CGAACTA | 1630 | 0.0 | 14.641106 | 29 |
TCAACGC | 46885 | 0.0 | 14.560094 | 4 |
CAACGCA | 47305 | 0.0 | 14.411266 | 5 |
AACGCAG | 47360 | 0.0 | 14.410157 | 6 |
GTATTAG | 4230 | 0.0 | 14.039007 | 1 |
TTAACGG | 1560 | 0.0 | 13.99359 | 35 |
GCGAACT | 1770 | 0.0 | 13.90113 | 28 |
TAACGGC | 1625 | 0.0 | 13.547692 | 36 |
ACGCAGA | 50955 | 0.0 | 13.397115 | 7 |
CGCAGAG | 51450 | 0.0 | 13.261031 | 8 |
AGAGTAC | 53230 | 0.0 | 12.793256 | 11 |
CAGAGTA | 53755 | 0.0 | 12.695843 | 10 |
GCAGAGT | 54705 | 0.0 | 12.482132 | 9 |
TATACTG | 3300 | 0.0 | 12.445455 | 5 |
AGCGAAC | 1930 | 0.0 | 12.365285 | 27 |
GTATTAA | 2645 | 0.0 | 12.310019 | 1 |