FastQCFastQC Report
Thu 28 Apr 2016
ERR1041470.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1041470.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13028615
Sequences flagged as poor quality0
Sequence length43
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT787150.6041701285977059No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT531760.4081477578391871No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT436430.33497804640017376No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT139820.10731762355400017No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGTATCA141700.026.9601291
GTATCAA329600.020.8798541
ATCAACG463700.014.7018553
TATCAAC468250.014.6498662
CGAACTA16300.014.64110629
TCAACGC468850.014.5600944
CAACGCA473050.014.4112665
AACGCAG473600.014.4101576
GTATTAG42300.014.0390071
TTAACGG15600.013.9935935
GCGAACT17700.013.9011328
TAACGGC16250.013.54769236
ACGCAGA509550.013.3971157
CGCAGAG514500.013.2610318
AGAGTAC532300.012.79325611
CAGAGTA537550.012.69584310
GCAGAGT547050.012.4821329
TATACTG33000.012.4454555
AGCGAAC19300.012.36528527
GTATTAA26450.012.3100191