FastQCFastQC Report
Thu 28 Apr 2016
ERR1041455.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1041455.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6444430
Sequences flagged as poor quality0
Sequence length43
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGTATCA38500.020.6142861
GTATCAA56450.013.862712
TTAACGG3750.013.81333335
TCGTATG1755.3160693E-712.68571537
TAACGGC4150.012.48192836
TAGGACC8400.011.0119054
GTATTAG12300.010.9796741
GTATACG2401.846438E-710.7916671
TATACTG8400.010.7916665
TTAGACT6050.010.7024794
CTAGAAC9300.010.5430113
GTTAGAC3554.5474735E-1110.4225363
GTCGTAC3402.2737368E-1010.3382361
ATCAACG78850.010.2999372
TCAACGC79900.010.2340423
CAACGCA79400.010.2285894
AACGCAG80750.010.2179575
TAGAACT11450.010.179044
TACGCTG4650.09.9462375
TAATACT12850.09.9338524
Produced by FastQC (version 0.11.5)