FastQCFastQC Report
Thu 28 Apr 2016
ERR1041452.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1041452.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2823183
Sequences flagged as poor quality0
Sequence length43
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT59020.2090548150792917No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT49570.1755819583781852No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT28430.10070193820237654No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGTATCA30950.019.1276251
CGCGAAA750.00410637414.815
GTATCAA41350.014.2720682
TCACGTA3050.013.9508225
GCTAGAC1857.3951014E-813.03
ACCGTCG1000.001833629712.9500018
CGAACTA2602.3646862E-1112.80769324
TAAGACT5500.012.4454554
TTGCGTA1205.125546E-412.33333322
TCGTAAG1653.8084963E-612.3333322
TACCGTC1951.4696525E-712.3333327
AGTACCG2002.042907E-712.0250015
CTAGACT3103.6379788E-1211.9354844
GTATACT2951.6370905E-1111.9152554
TATATCG1100.003747364311.7727275
TAATACT7800.011.6217944
ATGCGTA1451.9401166E-411.482758510
TAGCGTA1150.005221660711.260875
TTGTACG2155.2152063E-711.1860489
ATCACGT3650.011.15068524