Basic Statistics
Measure | Value |
---|---|
Filename | ERR1041452.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 2823183 |
Sequences flagged as poor quality | 0 |
Sequence length | 43 |
%GC | 49 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT | 5902 | 0.2090548150792917 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT | 4957 | 0.1755819583781852 | No Hit |
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT | 2843 | 0.10070193820237654 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 3095 | 0.0 | 19.127625 | 1 |
CGCGAAA | 75 | 0.004106374 | 14.8 | 15 |
GTATCAA | 4135 | 0.0 | 14.272068 | 2 |
TCACGTA | 305 | 0.0 | 13.95082 | 25 |
GCTAGAC | 185 | 7.3951014E-8 | 13.0 | 3 |
ACCGTCG | 100 | 0.0018336297 | 12.950001 | 8 |
CGAACTA | 260 | 2.3646862E-11 | 12.807693 | 24 |
TAAGACT | 550 | 0.0 | 12.445455 | 4 |
TTGCGTA | 120 | 5.125546E-4 | 12.333333 | 22 |
TCGTAAG | 165 | 3.8084963E-6 | 12.333332 | 2 |
TACCGTC | 195 | 1.4696525E-7 | 12.333332 | 7 |
AGTACCG | 200 | 2.042907E-7 | 12.025001 | 5 |
CTAGACT | 310 | 3.6379788E-12 | 11.935484 | 4 |
GTATACT | 295 | 1.6370905E-11 | 11.915255 | 4 |
TATATCG | 110 | 0.0037473643 | 11.772727 | 5 |
TAATACT | 780 | 0.0 | 11.621794 | 4 |
ATGCGTA | 145 | 1.9401166E-4 | 11.4827585 | 10 |
TAGCGTA | 115 | 0.0052216607 | 11.26087 | 5 |
TTGTACG | 215 | 5.2152063E-7 | 11.186048 | 9 |
ATCACGT | 365 | 0.0 | 11.150685 | 24 |