Basic Statistics
Measure | Value |
---|---|
Filename | ERR1041451.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 9485170 |
Sequences flagged as poor quality | 0 |
Sequence length | 43 |
%GC | 47 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT | 33164 | 0.34964054413363177 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT | 31874 | 0.33604036617161315 | No Hit |
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT | 23080 | 0.24332721501037938 | No Hit |
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 12502 | 0.13180575572182682 | No Hit |
GTACGGAAGCAGTGGTATCAACGCAGAGTACGGAAGCAGTGGT | 11628 | 0.12259137158321885 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
ATCTCGT | 940 | 0.0 | 14.563828 | 37 |
TTAACGG | 1940 | 0.0 | 13.731958 | 35 |
TAATACT | 4045 | 0.0 | 12.94314 | 4 |
TATACTG | 1245 | 0.0 | 12.779116 | 5 |
AATACTG | 3475 | 0.0 | 12.776979 | 5 |
TAGACCG | 145 | 1.374348E-5 | 12.75862 | 5 |
TAACGGC | 2110 | 0.0 | 12.625592 | 36 |
GGTAAAC | 2550 | 0.0 | 12.623529 | 35 |
GGTATCA | 20940 | 0.0 | 12.421681 | 1 |
ATACTGG | 3205 | 0.0 | 12.352573 | 6 |
GTATTAG | 3815 | 0.0 | 12.317169 | 1 |
TCTAATA | 3345 | 0.0 | 11.946188 | 2 |
ATTAGAG | 2815 | 0.0 | 11.895205 | 3 |
TACTGGT | 3090 | 0.0 | 11.7944975 | 7 |
TTGGTAA | 2890 | 0.0 | 11.586506 | 33 |
ACCGCCT | 2495 | 0.0 | 11.567134 | 12 |
TCGGACG | 640 | 0.0 | 11.5625 | 13 |
TCACGTA | 2705 | 0.0 | 11.489833 | 25 |
CGAACTA | 2390 | 0.0 | 11.37866 | 24 |
AGACCGA | 1240 | 0.0 | 11.189516 | 25 |