Basic Statistics
Measure | Value |
---|---|
Filename | ERR1041446.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 7971349 |
Sequences flagged as poor quality | 0 |
Sequence length | 43 |
%GC | 48 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT | 24512 | 0.307501277387303 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT | 24117 | 0.3025460307910242 | No Hit |
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT | 17700 | 0.22204522722565528 | No Hit |
GGATTACTCCGGTCTGAACTCAGATCACGTAGGACTTTAATCG | 10641 | 0.13349057982532192 | No Hit |
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 9115 | 0.11434701955716656 | No Hit |
CCATTGGGATGTCCTGATCCAACATCGAGGTCGTAAACCCTAT | 8330 | 0.10449925100506827 | No Hit |
TCCCAATGGTGCAGCCGCTATTAAAGGTTCGTTTGTTCAACGA | 8176 | 0.10256733207892414 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 9310 | 0.0 | 21.16273 | 1 |
GTATCAA | 13920 | 0.0 | 14.207256 | 2 |
AATACTG | 3110 | 0.0 | 13.9791 | 5 |
TTAACGG | 1875 | 0.0 | 13.8133335 | 35 |
GGTAAAC | 2295 | 0.0 | 13.703703 | 35 |
TAGGACC | 1910 | 0.0 | 13.56021 | 4 |
TCTAATA | 3115 | 0.0 | 13.36276 | 2 |
ATTAGAG | 2355 | 0.0 | 13.040339 | 3 |
ATACTGG | 2975 | 0.0 | 12.872269 | 6 |
TTGGTAA | 2430 | 0.0 | 12.866255 | 33 |
TATTAGA | 2735 | 0.0 | 12.851919 | 2 |
TACTGGT | 2860 | 0.0 | 12.678321 | 7 |
TAATACT | 4085 | 0.0 | 12.589963 | 4 |
GTAAACA | 2515 | 0.0 | 12.578529 | 36 |
GATGCTA | 2665 | 0.0 | 12.425892 | 14 |
TAACGGC | 2095 | 0.0 | 12.362768 | 36 |
TTAGGAC | 2305 | 0.0 | 12.039045 | 3 |
ATGTACG | 510 | 0.0 | 11.970588 | 11 |
AATCGTC | 560 | 0.0 | 11.892857 | 28 |
AACGGCC | 2180 | 0.0 | 11.880734 | 37 |