Basic Statistics
Measure | Value |
---|---|
Filename | ERR1041441.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 9889335 |
Sequences flagged as poor quality | 0 |
Sequence length | 42 |
%GC | 43 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT | 64533 | 0.6525514607402823 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT | 47784 | 0.4831871910497521 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTT | 31033 | 0.31380269755246437 | No Hit |
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 12674 | 0.12815826342216136 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 10220 | 0.0 | 25.309198 | 1 |
GTATCAA | 25545 | 0.0 | 21.139166 | 1 |
TATCAAC | 38645 | 0.0 | 13.875534 | 2 |
ATCAACG | 38485 | 0.0 | 13.858386 | 3 |
AACGCAG | 38775 | 0.0 | 13.722244 | 6 |
TCAACGC | 38955 | 0.0 | 13.686561 | 4 |
CAACGCA | 39295 | 0.0 | 13.568138 | 5 |
GTATTAG | 3260 | 0.0 | 13.527608 | 1 |
ACGCAGA | 41710 | 0.0 | 12.752337 | 7 |
CGCAGAG | 42110 | 0.0 | 12.639753 | 8 |
TTAACGG | 1070 | 0.0 | 12.448598 | 35 |
AGAGTAC | 43990 | 0.0 | 12.005456 | 11 |
TATACTG | 2770 | 0.0 | 11.956679 | 5 |
CAGAGTA | 44345 | 0.0 | 11.929643 | 10 |
TATACCG | 410 | 0.0 | 11.853659 | 5 |
GCAGAGT | 44665 | 0.0 | 11.848204 | 9 |
TAACGGC | 1110 | 0.0 | 11.837838 | 36 |
CGAACTA | 1040 | 0.0 | 10.903846 | 29 |
CCGTTAA | 935 | 0.0 | 10.780749 | 16 |
GCGAACT | 1060 | 0.0 | 10.528302 | 28 |