Basic Statistics
Measure | Value |
---|---|
Filename | ERR1041438.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 187328 |
Sequences flagged as poor quality | 0 |
Sequence length | 43 |
%GC | 43 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT | 2986 | 1.5939955585924155 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT | 2324 | 1.2406047147249744 | No Hit |
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 1766 | 0.9427314656645029 | No Hit |
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT | 847 | 0.4521481038606081 | No Hit |
AACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 506 | 0.27011445165698666 | No Hit |
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 474 | 0.25303211479330373 | No Hit |
GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 428 | 0.22847625555175946 | No Hit |
ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 366 | 0.19537922787837375 | No Hit |
GCGCAAGACGGACCAGAGCGAAAGCATTTGCCAAGAATGTTTT | 356 | 0.19004099760847284 | No Hit |
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 317 | 0.16922189955585926 | No Hit |
GAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAA | 263 | 0.14039545609839427 | No Hit |
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGC | 261 | 0.13932781004441408 | No Hit |
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTG | 218 | 0.1163734198838401 | No Hit |
TCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 191 | 0.10196019815510762 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CTCGTAA | 20 | 0.0018380058 | 37.0 | 1 |
TCGTAAG | 20 | 0.0018380058 | 37.0 | 2 |
GCGTCAG | 30 | 3.5880867E-4 | 30.833332 | 2 |
TTACCAG | 25 | 0.005484749 | 29.6 | 10 |
TAGTGTA | 35 | 8.841589E-4 | 26.428572 | 31 |
CGAAAGC | 80 | 9.658834E-10 | 25.4375 | 19 |
GCGAAAG | 80 | 9.658834E-10 | 25.4375 | 18 |
GCGCAAG | 80 | 9.658834E-10 | 25.4375 | 1 |
ACGGACC | 80 | 9.658834E-10 | 25.4375 | 8 |
CGGACCA | 80 | 9.658834E-10 | 25.4375 | 9 |
GACGGAC | 90 | 1.4006218E-10 | 24.666666 | 7 |
AGCGAAA | 85 | 1.9499566E-9 | 23.941177 | 17 |
CGCAAGA | 85 | 1.9499566E-9 | 23.941177 | 2 |
CAGAGCG | 85 | 1.9499566E-9 | 23.941177 | 14 |
AAGACGG | 95 | 2.764864E-10 | 23.368422 | 5 |
CAAGACG | 95 | 2.764864E-10 | 23.368422 | 4 |
GGGTAAA | 40 | 0.0019251907 | 23.125 | 1 |
CCGTAGA | 40 | 0.0019251907 | 23.125 | 2 |
GTATACT | 40 | 0.0019251907 | 23.125 | 4 |
GAGCGAA | 90 | 3.776222E-9 | 22.61111 | 16 |