Basic Statistics
Measure | Value |
---|---|
Filename | ERR1041435.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 3894233 |
Sequences flagged as poor quality | 0 |
Sequence length | 43 |
%GC | 46 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT | 16393 | 0.42095580824259876 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT | 15307 | 0.39306841681019083 | No Hit |
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT | 11899 | 0.30555439286760705 | No Hit |
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 7156 | 0.18375890708131742 | No Hit |
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGC | 4539 | 0.11655697026859975 | No Hit |
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTG | 4170 | 0.10708142014101364 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGCGATA | 65 | 0.0015808499 | 17.076923 | 14 |
TATATCG | 100 | 1.09442946E-4 | 14.799999 | 5 |
TACCGTC | 490 | 0.0 | 14.72449 | 7 |
TTAGACT | 440 | 0.0 | 14.295454 | 4 |
CGTCGTA | 435 | 0.0 | 14.034482 | 10 |
CTAGTAC | 305 | 0.0 | 13.95082 | 3 |
GTATTAG | 865 | 0.0 | 13.6878605 | 1 |
TATACTG | 845 | 0.0 | 13.573965 | 5 |
TCTAGCG | 385 | 0.0 | 13.454545 | 28 |
CTAGCGG | 415 | 0.0 | 13.373494 | 29 |
ATACCGT | 650 | 0.0 | 13.092307 | 6 |
CGCAATA | 440 | 0.0 | 13.034091 | 36 |
ACCGTCG | 490 | 0.0 | 12.836736 | 8 |
TAACGCC | 520 | 0.0 | 12.807693 | 4 |
CAAGACG | 810 | 0.0 | 12.790123 | 4 |
TAGTACT | 600 | 0.0 | 12.641666 | 4 |
CCGTCGT | 490 | 0.0 | 12.459185 | 9 |
AAGACGG | 820 | 0.0 | 12.408537 | 5 |
ACAGCGT | 375 | 0.0 | 12.333334 | 8 |
TAGGTCG | 150 | 1.9462404E-5 | 12.333333 | 21 |