Basic Statistics
Measure | Value |
---|---|
Filename | ERR1041434.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 1442659 |
Sequences flagged as poor quality | 0 |
Sequence length | 43 |
%GC | 45 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT | 10739 | 0.7443893532705927 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT | 10225 | 0.7087606981275547 | No Hit |
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 5350 | 0.37084300586625113 | No Hit |
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT | 4589 | 0.3180931876486404 | No Hit |
GCGCAAGACGGACCAGAGCGAAAGCATTTGCCAAGAATGTTTT | 1467 | 0.1016872317020169 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGATGCG | 250 | 0.0 | 17.76 | 33 |
CTATAGT | 135 | 2.2204404E-8 | 16.444445 | 4 |
GACGGAC | 315 | 0.0 | 16.444445 | 7 |
TCTACAC | 170 | 8.54925E-11 | 16.32353 | 3 |
CGGCGAT | 285 | 0.0 | 16.22807 | 30 |
ACGGACC | 320 | 0.0 | 16.1875 | 8 |
TAGACTA | 155 | 7.212293E-9 | 15.516129 | 5 |
TGGTCGG | 205 | 5.456968E-12 | 15.341464 | 37 |
GCGATGC | 290 | 0.0 | 15.310345 | 32 |
CGTATAC | 85 | 5.365328E-4 | 15.235294 | 3 |
CGTCGTA | 170 | 1.4861143E-9 | 15.235294 | 10 |
CAGTCCG | 85 | 5.365328E-4 | 15.235294 | 9 |
TACCGTC | 195 | 4.1836756E-11 | 15.179487 | 7 |
CCTATAC | 185 | 3.0559022E-10 | 15.0 | 3 |
TCCGACC | 300 | 0.0 | 14.8 | 8 |
GTACTAG | 100 | 1.0936707E-4 | 14.8 | 1 |
GTATACT | 200 | 6.184564E-11 | 14.8 | 4 |
ACCGTCG | 175 | 2.239176E-9 | 14.8 | 8 |
AAGACGG | 375 | 0.0 | 14.799999 | 5 |
CGCAAGA | 340 | 0.0 | 14.691176 | 2 |