FastQCFastQC Report
Thu 28 Apr 2016
ERR1041428.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1041428.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6617446
Sequences flagged as poor quality0
Sequence length42
%GC43

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT384720.5813723300499921No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT284610.430090400435455No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTT176650.266945888187074No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT77120.11654042964612027No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGTATCA61550.025.969131
GTATCAA150150.021.1228771
TAACGGC14750.015.49830636
TTAACGG14900.015.46308735
GTATTAG27800.014.5683451
ATCAACG222350.014.069713
GGCACCG16400.014.04877959
TCAACGC223850.013.9673884
AACGCAG226200.013.8302386
TATCAAC228750.013.8177042
CAACGCA226950.013.7924665
TATACTG15850.013.6277615
TAGGACC13100.013.4656484
GCACCGC16900.013.42011710
TTTAACG17700.013.32203434
ACGCAGA242450.012.8958537
CGCAGAG245250.012.7633038
ATTAGAG22500.012.723
ACCGCCT19250.012.71688412
TCTATAC13500.012.6666673