Basic Statistics
Measure | Value |
---|---|
Filename | ERR1041428.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 6617446 |
Sequences flagged as poor quality | 0 |
Sequence length | 42 |
%GC | 43 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT | 38472 | 0.5813723300499921 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT | 28461 | 0.430090400435455 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTT | 17665 | 0.266945888187074 | No Hit |
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 7712 | 0.11654042964612027 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 6155 | 0.0 | 25.96913 | 1 |
GTATCAA | 15015 | 0.0 | 21.122877 | 1 |
TAACGGC | 1475 | 0.0 | 15.498306 | 36 |
TTAACGG | 1490 | 0.0 | 15.463087 | 35 |
GTATTAG | 2780 | 0.0 | 14.568345 | 1 |
ATCAACG | 22235 | 0.0 | 14.06971 | 3 |
GGCACCG | 1640 | 0.0 | 14.0487795 | 9 |
TCAACGC | 22385 | 0.0 | 13.967388 | 4 |
AACGCAG | 22620 | 0.0 | 13.830238 | 6 |
TATCAAC | 22875 | 0.0 | 13.817704 | 2 |
CAACGCA | 22695 | 0.0 | 13.792466 | 5 |
TATACTG | 1585 | 0.0 | 13.627761 | 5 |
TAGGACC | 1310 | 0.0 | 13.465648 | 4 |
GCACCGC | 1690 | 0.0 | 13.420117 | 10 |
TTTAACG | 1770 | 0.0 | 13.322034 | 34 |
ACGCAGA | 24245 | 0.0 | 12.895853 | 7 |
CGCAGAG | 24525 | 0.0 | 12.763303 | 8 |
ATTAGAG | 2250 | 0.0 | 12.72 | 3 |
ACCGCCT | 1925 | 0.0 | 12.716884 | 12 |
TCTATAC | 1350 | 0.0 | 12.666667 | 3 |