Basic Statistics
Measure | Value |
---|---|
Filename | ERR1041416.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 7907728 |
Sequences flagged as poor quality | 0 |
Sequence length | 43 |
%GC | 47 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT | 79710 | 1.0080012868424406 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT | 76146 | 0.962931451359986 | No Hit |
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT | 53237 | 0.6732275060548365 | No Hit |
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 24660 | 0.3118468414695093 | No Hit |
ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 8233 | 0.10411334330164113 | No Hit |
CTTATACACATCTCCGAGCCCACGAGACGGACTCCTATCTCGT | 8180 | 0.10344311286377074 | No Hit |
AACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 7968 | 0.10076219111228915 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 20035 | 0.0 | 24.128025 | 1 |
CGAGACG | 1305 | 0.0 | 23.390804 | 23 |
ATCTCGT | 1390 | 0.0 | 21.827337 | 37 |
TATACAC | 1755 | 0.0 | 20.02849 | 3 |
GACGGAC | 1535 | 0.0 | 19.765472 | 26 |
ACGAGAC | 1580 | 0.0 | 19.553797 | 22 |
CCCACGA | 1610 | 0.0 | 18.84472 | 19 |
ATCTCCG | 1685 | 0.0 | 18.445105 | 10 |
TATCTCG | 1700 | 0.0 | 18.064707 | 36 |
TCTCCGA | 1890 | 0.0 | 16.738096 | 11 |
AGACGGA | 1865 | 0.0 | 16.565683 | 25 |
CGAGCCC | 1865 | 0.0 | 16.466488 | 15 |
CGGACTC | 1895 | 0.0 | 16.10818 | 28 |
TTATACA | 2085 | 0.0 | 16.059952 | 2 |
TCCGAGC | 1980 | 0.0 | 15.790404 | 13 |
GTATCAA | 30735 | 0.0 | 15.7341795 | 2 |
GAGACGG | 2040 | 0.0 | 15.053922 | 24 |
CACGAGA | 2030 | 0.0 | 15.036944 | 21 |
TACACAT | 2450 | 0.0 | 14.95102 | 5 |
CCGAGCC | 2330 | 0.0 | 14.76824 | 14 |