Basic Statistics
Measure | Value |
---|---|
Filename | ERR1146681_1.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 4892049 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 45 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 16564 | 0.3385902308010406 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 13849 | 0.2830920131830241 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 9353 | 0.19118778246088705 | No Hit |
CCATCATGCTATTAATGATATTAAAATCCCAACTATACCAAAGAATATCC | 5069 | 0.10361711421942013 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 10040 | 0.0 | 48.72781 | 1 |
GTATCAA | 18535 | 0.0 | 41.952473 | 1 |
GTGGTAT | 2420 | 0.0 | 41.015156 | 1 |
GGGCACC | 5035 | 0.0 | 40.62629 | 94 |
CAACGCA | 22900 | 0.0 | 32.98123 | 5 |
ATCAACG | 22940 | 0.0 | 32.891174 | 3 |
CTGTGCG | 6905 | 0.0 | 32.33708 | 9 |
TATCAAC | 24685 | 0.0 | 31.519526 | 2 |
TAGTACT | 7215 | 0.0 | 31.099287 | 4 |
GTACTAG | 5195 | 0.0 | 31.058884 | 1 |
AACGCAG | 26030 | 0.0 | 30.06137 | 6 |
ACTGTGC | 7680 | 0.0 | 29.924692 | 8 |
GTACTGT | 7825 | 0.0 | 28.768677 | 6 |
TCAACGC | 27130 | 0.0 | 28.123507 | 4 |
TACTGTG | 8515 | 0.0 | 28.038336 | 7 |
ACGCAGA | 27330 | 0.0 | 27.599966 | 7 |
TAGGCAT | 6720 | 0.0 | 27.485888 | 5 |
CGCAGAG | 27565 | 0.0 | 27.348179 | 8 |
CTAGTAC | 8430 | 0.0 | 26.95181 | 3 |
GCAGAGT | 29235 | 0.0 | 25.630438 | 9 |