Basic Statistics
Measure | Value |
---|---|
Filename | ERR1146578_2.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 5417925 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 45 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 7975 | 0.0 | 41.397865 | 1 |
GTATCAA | 13190 | 0.0 | 37.117397 | 1 |
CAACGCA | 13840 | 0.0 | 32.200844 | 5 |
ATCAACG | 14135 | 0.0 | 31.697145 | 3 |
TATCAAC | 16055 | 0.0 | 30.161295 | 2 |
AACGCAG | 17015 | 0.0 | 28.257797 | 6 |
CGTTAAC | 1155 | 0.0 | 27.68844 | 1 |
ACGCAGA | 16755 | 0.0 | 26.563675 | 7 |
ACGTTAA | 975 | 0.0 | 26.511644 | 8 |
CGCAGAG | 17110 | 0.0 | 25.957354 | 8 |
GTACATG | 28985 | 0.0 | 25.78233 | 1 |
TACATGG | 28285 | 0.0 | 25.646776 | 2 |
GTGGTAT | 2170 | 0.0 | 25.573715 | 1 |
TATTCGC | 485 | 0.0 | 25.193363 | 9 |
ACGCAAG | 890 | 0.0 | 24.819124 | 8 |
GTGATCG | 3020 | 0.0 | 24.743937 | 8 |
ACATGGG | 28550 | 0.0 | 24.4701 | 3 |
TATTCTC | 2885 | 0.0 | 23.627466 | 5 |
TGATCGC | 3155 | 0.0 | 23.534895 | 9 |
GTATAAG | 4040 | 0.0 | 23.514814 | 1 |