ERR1146481_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	ERR1146481_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	3884414
Sequences flagged as poor quality	0
Sequence length	100
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCCTAGTACTGTGCGCCAATTAGGTCGTCATTGCGCCAGCTCGTCAGCGC	9252	0.23818264479532822	No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	8478	0.21825685933579683	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	7706	0.1983825616939904	No Hit
ATTTAGGGCTATTGATATTTAACAAATATCCAGCAAAGGTTTTTCCAGGA	7164	0.18442936309054597	No Hit
GTACTAGGCATCGTCATCCAATGCGACGAGTCCTACACTATCTTGGATAT	7134	0.18365704582467265	No Hit
ATACTATATAGGTGGCTATCTATCCCTACCAAGGCTTATATTGAAGTATA	5944	0.15302179427836476	No Hit
ATATAGTATAGCTTCCCATCTTCTTTGAGAGTTGTTGGTTTATGCTCATC	5873	0.1511939767491313	No Hit
CCTATATAGTATAGCTTCCCATCTTCTTTGAGAGTTGTTGGTTTATGCTC	5863	0.15093653766050685	No Hit
CTATATAGGTGGCTATCTATCCCTACCAAGGCTTATATTGAAGTATAAAC	4854	0.12496093361830124	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4777	0.1229786526358931	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GGTATCA	8665	40.05385	1
GTATCAA	13860	33.62536	1
GGGCACC	3085	30.646133	94
CAACGCA	16370	27.818598	5
ATCAACG	16415	27.69684	3
GTACTAG	2785	27.01788	1
CTGTGCG	3890	26.340092	9
TATCAAC	17665	26.243675	2
AACGCAG	17990	26.201725	6
TAGTACT	3945	25.979557	4
TCAACGC	18415	24.789612	4
CTAACGC	1100	24.362776	3
CTAGTAC	4395	24.17654	3
TAACGCC	1185	23.804285	4
TCTAACG	1190	23.706404	2
GTACTGT	4545	23.67891	6
ACGCAGA	19420	23.401157	7
ACTGTGC	5025	23.194002	8
CGCAGAG	19805	22.946249	8
TAGGCAT	3555	22.870022	5