ERR1146473_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	ERR1146473_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	3081780
Sequences flagged as poor quality	0
Sequence length	100
%GC	46

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Sequence	Count	Percentage	Possible Source
GCCTAGTACTGTGCGCCAATTAGGTCGTCATTGCGCCAGCTCGTCAGCGC	7036	0.22830961327544472	No Hit
GTACTAGGCATCGTCATCCAATGCGACGAGTCCTACACTATCTTGGATAT	5447	0.1767485024888214	No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5153	0.16720856128601003	No Hit
ATTTAGGGCTATTGATATTTAACAAATATCCAGCAAAGGTTTTTCCAGGA	5057	0.16409347844427571	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4780	0.15510516649468814	No Hit
ATATAGTATAGCTTCCCATCTTCTTTGAGAGTTGTTGGTTTATGCTCATC	4566	0.1481611276599887	No Hit
CCTATATAGTATAGCTTCCCATCTTCTTTGAGAGTTGTTGGTTTATGCTC	4268	0.13849139133877175	No Hit
ATACTATATAGGTGGCTATCTATCCCTACCAAGGCTTATATTGAAGTATA	4194	0.13609018164826822	No Hit
CTATATAGGTGGCTATCTATCCCTACCAAGGCTTATATTGAAGTATAAAC	3230	0.1048095581125194	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GGTATCA	5190	46.655903	1
GTATCAA	9105	39.298084	1
CAACGCA	10910	31.96411	5
ATCAACG	10950	31.898548	3
GTACTAG	2295	31.345518	1
TATCAAC	11975	29.600985	2
AACGCAG	12245	29.322699	6
TCAACGC	12455	28.119576	4
TAGGCAT	2905	26.856253	5
ACGCAGA	13165	26.381102	7
CGCAGAG	13275	26.055872	8
GTACATG	11640	24.236225	1
GCATCGT	2680	24.199514	8
GTGGTAT	2075	24.018974	1
TACATGG	11555	23.841742	2
GCAGAGT	14660	23.534718	9
ACATGGG	11450	23.443737	3
CTAGGCA	3295	23.39832	4
CATGGGG	9180	21.917818	4
GGGCACC	2490	21.913345	94