ERR1146444_2.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	ERR1146444_2.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	4697207
Sequences flagged as poor quality	0
Sequence length	100
%GC	46

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN	14353	0.3055645620897695	No Hit
GCCTAGTACTGTGCGCCAATTAGGTCGTCATTGCGCCAGCTCGTCAGCGC	11226	0.23899308674282396	No Hit
GTACTAGGCATCGTCATCCAATGCGACGAGTCCTACACTATCTTGGATAT	9295	0.19788355079944317	No Hit
ATTTAGGGCTATTGATATTTAACAAATATCCAGCAAAGGTTTTTCCAGGA	7182	0.15289937190334596	No Hit
ATATAGTATAGCTTCCCATCTTCTTTGAGAGTTGTTGGTTTATGCTCATC	6724	0.1431488967805762	No Hit
ATACTATATAGGTGGCTATCTATCCCTACCAAGGCTTATATTGAAGTATA	6460	0.13752853557443817	No Hit
CCTATATAGTATAGCTTCCCATCTTCTTTGAGAGTTGTTGGTTTATGCTC	5877	0.12511690457755004	No Hit
CTATATAGGTGGCTATCTATCCCTACCAAGGCTTATATTGAAGTATAAAC	5408	0.11513224773785782	No Hit
GTATACGGGCGTCGGCATCCAGACCGTCGGCTGATCGTGGTTTTACTAGG	4710	0.10027235333678076	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GTACTAG	3415	35.488705	1
GTATCAA	8230	32.660496	1
CAACGCA	7475	31.365858	5
TAGGCAT	4310	30.742533	5
GGGCACC	4300	30.736078	94
GGTATCA	5280	30.187737	1
GCATCGT	3725	30.123123	8
CTGTGCG	4870	29.79232	9
TAGTACT	5000	29.03855	4
ATCAACG	8130	29.01564	3
CTAGGCA	5040	27.223175	4
GTACATG	17670	27.168083	1
TATCAAC	9640	27.153164	2
AACGCAG	9190	26.614199	6
TACATGG	17985	26.20793	2
ACATGGG	17350	26.16355	3
CTAGTAC	5605	25.738413	3
GTACTGT	5945	24.084583	6
ACTGTGC	6640	24.040262	8
TCAACGC	10130	23.795475	4