Basic Statistics
Measure | Value |
---|---|
Filename | ERR1146429_1.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 3888255 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 46 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GCCTAGTACTGTGCGCCAATTAGGTCGTCATTGCGCCAGCTCGTCAGCGC | 11054 | 0.28429205389049844 | No Hit |
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 8612 | 0.22148753103898794 | No Hit |
GTACTAGGCATCGTCATCCAATGCGACGAGTCCTACACTATCTTGGATAT | 7993 | 0.20556779326458785 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 7895 | 0.20304738243762305 | No Hit |
ATTTAGGGCTATTGATATTTAACAAATATCCAGCAAAGGTTTTTCCAGGA | 7570 | 0.19468887714411734 | No Hit |
ATACTATATAGGTGGCTATCTATCCCTACCAAGGCTTATATTGAAGTATA | 6344 | 0.16315802332923124 | No Hit |
CCTATATAGTATAGCTTCCCATCTTCTTTGAGAGTTGTTGGTTTATGCTC | 6146 | 0.1580657647196493 | No Hit |
ATATAGTATAGCTTCCCATCTTCTTTGAGAGTTGTTGGTTTATGCTCATC | 6071 | 0.15613687888268646 | No Hit |
CTATATAGGTGGCTATCTATCCCTACCAAGGCTTATATTGAAGTATAAAC | 5137 | 0.1321158205930424 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 4968 | 0.1277693978404194 | No Hit |
GTATACGGGCGTCGGCATCCAGACCGTCGGCTGATCGTGGTTTTACTAGG | 4407 | 0.11334133177993727 | No Hit |
GTGTAGGACTCGTCGCATTGGATGACGATGCCTAGTACTGTGCGCCAATT | 3984 | 0.10246241565946679 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 7410 | 0.0 | 44.230064 | 1 |
GTATCAA | 12335 | 0.0 | 38.578415 | 1 |
CAACGCA | 14640 | 0.0 | 31.204006 | 5 |
GTACTAG | 3110 | 0.0 | 30.84415 | 1 |
ATCAACG | 14860 | 0.0 | 30.719492 | 3 |
TATCAAC | 16090 | 0.0 | 29.57024 | 2 |
GGGCACC | 3730 | 0.0 | 29.510956 | 94 |
GTGGTAT | 2585 | 0.0 | 29.286558 | 1 |
TAGTACT | 4310 | 0.0 | 28.46784 | 4 |
AACGCAG | 16505 | 0.0 | 28.303442 | 6 |
CTGTGCG | 4435 | 0.0 | 27.662987 | 9 |
TCAACGC | 16795 | 0.0 | 27.346758 | 4 |
TAGGCAT | 3955 | 0.0 | 26.499855 | 5 |
CTAGTAC | 4750 | 0.0 | 26.12907 | 3 |
ACGCAGA | 17540 | 0.0 | 25.990253 | 7 |
CTAACGC | 1390 | 0.0 | 25.704693 | 3 |
CGCAGAG | 17815 | 0.0 | 25.53564 | 8 |
GTACATG | 14390 | 0.0 | 25.422709 | 1 |
CTAGGCA | 4325 | 0.0 | 25.216984 | 4 |
TCTAACG | 1455 | 0.0 | 24.880444 | 2 |