Basic Statistics
Measure | Value |
---|---|
Filename | ERR873426.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 75815085 |
Sequences flagged as poor quality | 0 |
Sequence length | 36 |
%GC | 53 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTT | 1727995 | 2.2792231915323975 | Illumina Paired End PCR Primer 2 (96% over 25bp) |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGGTTCA | 203225 | 0.0 | 27.796465 | 1 |
AGCGGTT | 194850 | 0.0 | 27.778921 | 30 |
AATGCCG | 202495 | 0.0 | 27.665436 | 13 |
GATCGGA | 200655 | 0.0 | 27.389736 | 21 |
CGAGATC | 200850 | 0.0 | 27.34311 | 18 |
GAGCGGT | 199225 | 0.0 | 27.168894 | 29 |
TGCCGAG | 206065 | 0.0 | 27.154715 | 15 |
GAGATCG | 202540 | 0.0 | 27.147535 | 19 |
ATGCCGA | 207515 | 0.0 | 27.051334 | 14 |
AGATCGG | 203340 | 0.0 | 27.025925 | 20 |
TCGGAAG | 203230 | 0.0 | 27.001062 | 23 |
CCGAGAT | 203765 | 0.0 | 26.960777 | 17 |
GCCGAGA | 207440 | 0.0 | 26.9393 | 16 |
ATCGGAA | 204225 | 0.0 | 26.857025 | 22 |
AAGAGCG | 202380 | 0.0 | 26.838207 | 27 |
CGGAAGA | 204810 | 0.0 | 26.669735 | 24 |
AGAGCGG | 203900 | 0.0 | 26.659107 | 28 |
GAATGCC | 211315 | 0.0 | 26.501442 | 12 |
GGAATGC | 215980 | 0.0 | 25.979021 | 11 |
AGGAATG | 218040 | 0.0 | 25.847055 | 10 |