FastQCFastQC Report
Fri 27 May 2016
ERR765489_2.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR765489_2.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences20834426
Sequences flagged as poor quality0
Sequence length1
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
A542192126.023855900805714No Hit
C536059025.729482540099735No Hit
T526651025.27792222353522No Hit
G478540522.96873933555933No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)