FastQCFastQC Report
Fri 27 May 2016
ERR765439_2.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR765439_2.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences9903114
Sequences flagged as poor quality0
Sequence length1
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
C277792928.05106555372381No Hit
A245876024.828150014227848No Hit
T236430323.874338920060904No Hit
G230200723.245284261092017No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)