FastQCFastQC Report
Fri 27 May 2016
ERR765429_1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR765429_1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences17374404
Sequences flagged as poor quality0
Sequence length100
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA253840.14609997557326282No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT247320.14234732886376994No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT211640.12181137263758803No Hit

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTATCAA654850.025.2348691
GTACTAG69950.021.2260821
CAACGCA735000.021.190345
ATCAACG744250.020.9029253
AACGCAG765050.020.6389066
GTACATG1096650.019.7216591
TACATGG1067850.019.6682852
TCAACGC798750.019.564024
CATGGGG436600.019.520924
TATCAAC855300.019.4141032
AATACGG32600.019.3120755
TATTCGC10500.019.2392069
ACGCAGA807450.019.0838587
CGCAGAG810800.018.8601538
CTATTGA81800.018.7802949
ACATGGG1047300.018.6364063
GTACAAG69850.018.6330451
GTGATCG42250.018.45828
TAGGCAT92800.017.9730645
GCAGAGT831150.017.9292349