Basic Statistics
Measure | Value |
---|---|
Filename | ERR580281_2.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 3623319 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 45 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 14010 | 0.3866620631525957 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 12005 | 0.33132605768357687 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 6398 | 0.1765784354068742 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 7060 | 0.0 | 52.214428 | 1 |
GTATCAA | 12855 | 0.0 | 40.417492 | 1 |
GTGGTAT | 2410 | 0.0 | 35.118393 | 1 |
CAACGCA | 14875 | 0.0 | 33.587788 | 5 |
ATCAACG | 15045 | 0.0 | 33.144413 | 3 |
TATCAAC | 16100 | 0.0 | 31.85444 | 2 |
AACGCAG | 16640 | 0.0 | 30.523447 | 6 |
TCAACGC | 17210 | 0.0 | 29.222677 | 4 |
TGGTATC | 2900 | 0.0 | 28.853144 | 2 |
ACGCAGA | 17730 | 0.0 | 28.012857 | 7 |
GTACATG | 16490 | 0.0 | 27.687115 | 1 |
CGCAGAG | 18000 | 0.0 | 27.566175 | 8 |
TACATGG | 17030 | 0.0 | 26.388481 | 2 |
ACATGGG | 16740 | 0.0 | 25.857784 | 3 |
GTACTAG | 2540 | 0.0 | 25.360977 | 1 |
GCAGAGT | 19350 | 0.0 | 25.13579 | 9 |
CTGTGCG | 2995 | 0.0 | 24.477154 | 9 |
CATGGGG | 12890 | 0.0 | 23.774523 | 4 |
GCATCGT | 2550 | 0.0 | 23.770302 | 8 |
ATGGGGG | 10100 | 0.0 | 23.593464 | 5 |