Basic Statistics
Measure | Value |
---|---|
Filename | ERR580267_1.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 4164109 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 47 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 5786 | 0.13894929263379033 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 5004 | 0.12016976500855284 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 5385 | 0.0 | 46.861427 | 1 |
GTATCAA | 9550 | 0.0 | 41.784424 | 1 |
CAACGCA | 11365 | 0.0 | 34.115685 | 5 |
ATCAACG | 11530 | 0.0 | 33.66904 | 3 |
TATCAAC | 12135 | 0.0 | 32.80298 | 2 |
AACGCAG | 12540 | 0.0 | 31.51755 | 6 |
TCAACGC | 12475 | 0.0 | 31.231213 | 4 |
ACGCAGA | 14405 | 0.0 | 26.84977 | 7 |
CGCAGAG | 15030 | 0.0 | 25.670727 | 8 |
GTACATG | 16245 | 0.0 | 25.057547 | 1 |
TACATGG | 16570 | 0.0 | 23.853004 | 2 |
GTACTAG | 1880 | 0.0 | 23.333105 | 1 |
GCAGAGT | 16850 | 0.0 | 22.535408 | 9 |
ACATGGG | 17030 | 0.0 | 22.215767 | 3 |
CATGGGG | 13255 | 0.0 | 20.564734 | 4 |
GAGTACT | 7270 | 0.0 | 19.747875 | 12-13 |
GTGGTAT | 2705 | 0.0 | 19.704191 | 1 |
AGAGTAC | 15215 | 0.0 | 19.180645 | 10-11 |
TAGGCAT | 2830 | 0.0 | 18.931631 | 5 |
GTATATA | 1695 | 0.0 | 18.922853 | 1 |