FastQCFastQC Report
Thu 26 May 2016
ERR580267_1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR580267_1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4164109
Sequences flagged as poor quality0
Sequence length100
%GC47

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT57860.13894929263379033No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT50040.12016976500855284No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGTATCA53850.046.8614271
GTATCAA95500.041.7844241
CAACGCA113650.034.1156855
ATCAACG115300.033.669043
TATCAAC121350.032.802982
AACGCAG125400.031.517556
TCAACGC124750.031.2312134
ACGCAGA144050.026.849777
CGCAGAG150300.025.6707278
GTACATG162450.025.0575471
TACATGG165700.023.8530042
GTACTAG18800.023.3331051
GCAGAGT168500.022.5354089
ACATGGG170300.022.2157673
CATGGGG132550.020.5647344
GAGTACT72700.019.74787512-13
GTGGTAT27050.019.7041911
AGAGTAC152150.019.18064510-11
TAGGCAT28300.018.9316315
GTATATA16950.018.9228531