Basic Statistics
Measure | Value |
---|---|
Filename | ERR580246_1.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 9580347 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 45 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 27197 | 0.28388324556511363 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 24058 | 0.25111825281485106 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 13920 | 0.14529745112572645 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 14865 | 0.0 | 54.117786 | 1 |
GTATCAA | 27085 | 0.0 | 41.400818 | 1 |
CAACGCA | 32685 | 0.0 | 33.201637 | 5 |
ATCAACG | 32725 | 0.0 | 33.089767 | 3 |
TATCAAC | 34565 | 0.0 | 32.12903 | 2 |
TCAACGC | 34650 | 0.0 | 31.427284 | 4 |
AACGCAG | 35460 | 0.0 | 31.025879 | 6 |
GTGGTAT | 6460 | 0.0 | 27.300146 | 1 |
ACGCAGA | 39925 | 0.0 | 27.214888 | 7 |
CGCAGAG | 40925 | 0.0 | 26.480991 | 8 |
GTACATG | 30965 | 0.0 | 24.609127 | 1 |
GTACTAG | 4005 | 0.0 | 24.372143 | 1 |
TACATGG | 31460 | 0.0 | 23.603088 | 2 |
GCAGAGT | 45595 | 0.0 | 23.387344 | 9 |
ACATGGG | 31535 | 0.0 | 22.445175 | 3 |
TGGTATC | 7200 | 0.0 | 22.323591 | 2 |
GAGTACT | 28125 | 0.0 | 21.437883 | 12-13 |
CATGGGG | 23315 | 0.0 | 21.1458 | 4 |
CAGAGTA | 43945 | 0.0 | 20.5803 | 10-11 |
AGAGTAC | 41370 | 0.0 | 20.509508 | 10-11 |