Basic Statistics
Measure | Value |
---|---|
Filename | ERR580225_1.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 5832907 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 48 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GTATCAA | 15030 | 0.0 | 41.35715 | 1 |
GGTATCA | 8495 | 0.0 | 39.806126 | 1 |
CAACGCA | 16710 | 0.0 | 35.353104 | 5 |
ATCAACG | 17570 | 0.0 | 33.622963 | 3 |
TATCAAC | 18810 | 0.0 | 32.80451 | 2 |
AACGCAG | 20820 | 0.0 | 30.336985 | 6 |
GTGGTAT | 2865 | 0.0 | 29.30148 | 1 |
ACGCAGA | 21140 | 0.0 | 27.899256 | 7 |
CGCAGAG | 21615 | 0.0 | 27.025251 | 8 |
TCAACGC | 23205 | 0.0 | 25.863173 | 4 |
CTGTGCG | 6165 | 0.0 | 25.689207 | 9 |
TAGTACT | 6200 | 0.0 | 25.621084 | 4 |
TACCCCG | 535 | 0.0 | 25.474928 | 5 |
AAGCTAA | 4120 | 0.0 | 25.094545 | 9 |
GTACTAG | 4605 | 0.0 | 24.989315 | 1 |
CGTTAAC | 2200 | 0.0 | 24.867348 | 1 |
GCAGAGT | 23815 | 0.0 | 24.272156 | 9 |
GGGCACC | 5555 | 0.0 | 24.195984 | 94 |
GTACATG | 28785 | 0.0 | 23.052711 | 1 |
CTAGTAC | 7160 | 0.0 | 22.907877 | 3 |