Basic Statistics
Measure | Value |
---|---|
Filename | ERR580200_2.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 5830944 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 45 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 16966 | 0.2909648935060944 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 12783 | 0.2192269382110341 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 8805 | 0.151004708671529 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 8290 | 0.0 | 49.517532 | 1 |
GTATCAA | 14640 | 0.0 | 39.66662 | 1 |
CAACGCA | 16950 | 0.0 | 33.23258 | 5 |
ATCAACG | 17110 | 0.0 | 32.86939 | 3 |
TATCAAC | 18415 | 0.0 | 31.281118 | 2 |
AACGCAG | 18870 | 0.0 | 30.511665 | 6 |
GTACTAG | 3325 | 0.0 | 30.405077 | 1 |
TCAACGC | 18830 | 0.0 | 30.066761 | 4 |
GTACATG | 17575 | 0.0 | 29.912022 | 1 |
GCATCGT | 2950 | 0.0 | 28.678715 | 8 |
TACATGG | 17950 | 0.0 | 28.60725 | 2 |
ACATGGG | 17670 | 0.0 | 27.94237 | 3 |
ACGCAGA | 20535 | 0.0 | 27.556627 | 7 |
CTGTGCG | 4020 | 0.0 | 27.475607 | 9 |
CGCAGAG | 21080 | 0.0 | 26.733622 | 8 |
TACCTGG | 3810 | 0.0 | 26.165485 | 2 |
CATGGGG | 13700 | 0.0 | 25.502264 | 4 |
TAGTACT | 4515 | 0.0 | 25.20392 | 4 |
CTAGTAC | 4600 | 0.0 | 24.635971 | 3 |
GCAGAGT | 23585 | 0.0 | 23.455572 | 9 |