Basic Statistics
Measure | Value |
---|---|
Filename | ERR580175_1.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 8218674 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 45 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 25285 | 0.3076530350273049 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 21067 | 0.2563308874399934 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 13570 | 0.1651117929729297 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 14135 | 0.0 | 54.38301 | 1 |
GTATCAA | 25855 | 0.0 | 40.841953 | 1 |
CAACGCA | 31025 | 0.0 | 32.859394 | 5 |
ATCAACG | 31215 | 0.0 | 32.689896 | 3 |
GTACTAG | 5345 | 0.0 | 31.2264 | 1 |
TATCAAC | 33490 | 0.0 | 31.224106 | 2 |
AACGCAG | 34495 | 0.0 | 30.328186 | 6 |
TCAACGC | 35185 | 0.0 | 29.161371 | 4 |
GTACATG | 36735 | 0.0 | 27.849674 | 1 |
TAGGCAT | 6830 | 0.0 | 27.182423 | 5 |
TACATGG | 37445 | 0.0 | 27.022081 | 2 |
ACGCAGA | 37575 | 0.0 | 27.016693 | 7 |
ACATGGG | 36890 | 0.0 | 26.590765 | 3 |
CGCAGAG | 38385 | 0.0 | 26.38553 | 8 |
TAGTACT | 7430 | 0.0 | 26.189264 | 4 |
CTAGGCA | 7290 | 0.0 | 26.047474 | 4 |
CTGTGCG | 7440 | 0.0 | 25.834576 | 9 |
GTGGTAT | 4850 | 0.0 | 25.204199 | 1 |
CATGGGG | 27945 | 0.0 | 24.623442 | 4 |
GCTATTG | 7685 | 0.0 | 24.523394 | 8 |