Basic Statistics
Measure | Value |
---|---|
Filename | ERR580155_2.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 6011973 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 45 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 19621 | 0.3263654045019829 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 16457 | 0.2737370909683061 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 9748 | 0.16214311009048113 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 9180 | 0.0 | 51.62599 | 1 |
GTATCAA | 16955 | 0.0 | 41.84485 | 1 |
CAACGCA | 20345 | 0.0 | 34.062164 | 5 |
ATCAACG | 20410 | 0.0 | 34.047527 | 3 |
TATCAAC | 21540 | 0.0 | 32.720303 | 2 |
TCAACGC | 21485 | 0.0 | 32.342884 | 4 |
AACGCAG | 22020 | 0.0 | 31.969204 | 6 |
ACGCAGA | 24380 | 0.0 | 28.334145 | 7 |
CGCAGAG | 25125 | 0.0 | 27.325203 | 8 |
GTACATG | 19535 | 0.0 | 26.306149 | 1 |
GTGGTAT | 4140 | 0.0 | 25.779594 | 1 |
TACATGG | 19935 | 0.0 | 25.165731 | 2 |
GCAGAGT | 27450 | 0.0 | 24.46765 | 9 |
ACATGGG | 20090 | 0.0 | 24.456285 | 3 |
GTACTAG | 2735 | 0.0 | 23.551239 | 1 |
CATGGGG | 15185 | 0.0 | 23.221283 | 4 |
TGGTATC | 4460 | 0.0 | 23.087168 | 2 |
TAACGCC | 1220 | 0.0 | 21.96619 | 4 |
CTAACGC | 1215 | 0.0 | 21.283377 | 3 |
GAGTACT | 17200 | 0.0 | 21.00412 | 12-13 |