Basic Statistics
Measure | Value |
---|---|
Filename | ERR580130_2.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 3439935 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 46 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 10210 | 0.2968079338708435 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 8773 | 0.25503388872173455 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 4441 | 0.12910127662295945 | No Hit |
GTACATGGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTG | 3745 | 0.10886833617495681 | No Hit |
GTACATGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGC | 3535 | 0.10276356966047323 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 6455 | 0.0 | 52.005474 | 1 |
GTATCAA | 11295 | 0.0 | 42.29164 | 1 |
TATCAAC | 13820 | 0.0 | 34.218018 | 2 |
ATCAACG | 13690 | 0.0 | 34.052814 | 3 |
CAACGCA | 13690 | 0.0 | 33.951317 | 5 |
TCAACGC | 14480 | 0.0 | 32.228355 | 4 |
AACGCAG | 14725 | 0.0 | 32.192 | 6 |
GTGGTAT | 2410 | 0.0 | 29.458254 | 1 |
ACGCAGA | 16165 | 0.0 | 28.94774 | 7 |
CGCAGAG | 16675 | 0.0 | 27.949684 | 8 |
GTACATG | 15515 | 0.0 | 27.909685 | 1 |
TACATGG | 15545 | 0.0 | 27.427198 | 2 |
ACATGGG | 16015 | 0.0 | 25.851976 | 3 |
TACCTGG | 2040 | 0.0 | 25.577478 | 2 |
GCAGAGT | 18165 | 0.0 | 25.14383 | 9 |
CATGGGG | 13595 | 0.0 | 24.85462 | 4 |
ATGGGGG | 10650 | 0.0 | 24.535164 | 5 |
TGGTATC | 2810 | 0.0 | 24.089128 | 2 |
TGGGGGG | 10575 | 0.0 | 22.967953 | 6 |
GAGTACT | 9430 | 0.0 | 22.673534 | 12-13 |