Basic Statistics
Measure | Value |
---|---|
Filename | ERR580084_1.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 7577872 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 46 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 18407 | 0.24290460435330657 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 16472 | 0.21736973123853237 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 9631 | 0.12709372763224294 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 11730 | 0.0 | 53.149906 | 1 |
GTATCAA | 21420 | 0.0 | 40.93703 | 1 |
CAACGCA | 25815 | 0.0 | 32.95382 | 5 |
ATCAACG | 25905 | 0.0 | 32.80391 | 3 |
TATCAAC | 27350 | 0.0 | 31.768858 | 2 |
TCAACGC | 27980 | 0.0 | 30.52195 | 4 |
AACGCAG | 28445 | 0.0 | 30.51608 | 6 |
GTGGTAT | 4425 | 0.0 | 27.838448 | 1 |
GTACTAG | 3855 | 0.0 | 27.319994 | 1 |
ACGCAGA | 31065 | 0.0 | 27.246464 | 7 |
CGCAGAG | 31870 | 0.0 | 26.514187 | 8 |
GTACATG | 27810 | 0.0 | 25.004843 | 1 |
TACATGG | 28095 | 0.0 | 24.131994 | 2 |
CTGTGCG | 4955 | 0.0 | 23.901318 | 9 |
GCAGAGT | 35185 | 0.0 | 23.721947 | 9 |
TGGTATC | 5180 | 0.0 | 23.690145 | 2 |
ACATGGG | 28275 | 0.0 | 23.35525 | 3 |
TAGTACT | 5435 | 0.0 | 23.349052 | 4 |
CTAGTAC | 5520 | 0.0 | 22.649225 | 3 |
TAGGCAT | 5480 | 0.0 | 21.527447 | 5 |