Basic Statistics
Measure | Value |
---|---|
Filename | ERR580055_2.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 3147480 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 47 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 5274 | 0.16756262152579207 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 4522 | 0.14367049194911483 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 5070 | 0.0 | 52.501408 | 1 |
GTATCAA | 8740 | 0.0 | 39.60307 | 1 |
CAACGCA | 10100 | 0.0 | 32.952457 | 5 |
ATCAACG | 10240 | 0.0 | 32.502453 | 3 |
TATCAAC | 10750 | 0.0 | 31.624464 | 2 |
AACGCAG | 10850 | 0.0 | 31.134878 | 6 |
TCAACGC | 10965 | 0.0 | 30.653511 | 4 |
ACGCAGA | 12300 | 0.0 | 26.701391 | 7 |
GTACTAG | 1410 | 0.0 | 26.34938 | 1 |
CGCAGAG | 12610 | 0.0 | 25.82141 | 8 |
GTACATG | 13805 | 0.0 | 23.676138 | 1 |
TACATGG | 13950 | 0.0 | 23.325191 | 2 |
GCAGAGT | 14170 | 0.0 | 22.15325 | 9 |
ACATGGG | 14355 | 0.0 | 21.973646 | 3 |
GTGGTAT | 2115 | 0.0 | 21.568691 | 1 |
GAGTACT | 5585 | 0.0 | 21.205555 | 12-13 |
CAGAGTA | 13475 | 0.0 | 20.35045 | 10-11 |
GCATCGT | 1505 | 0.0 | 20.292645 | 8 |
CATGGGG | 11600 | 0.0 | 20.100483 | 4 |
TAGTACT | 1830 | 0.0 | 20.036707 | 4 |