Basic Statistics
Measure | Value |
---|---|
Filename | ERR580024_2.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 7257158 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 46 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 17341 | 0.23895028880451546 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 14080 | 0.19401534319633112 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 7667 | 0.10564741734987718 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 10825 | 0.0 | 50.74202 | 1 |
GTATCAA | 19760 | 0.0 | 40.19717 | 1 |
CAACGCA | 22525 | 0.0 | 34.139603 | 5 |
ATCAACG | 22955 | 0.0 | 33.49755 | 3 |
TATCAAC | 24250 | 0.0 | 32.452385 | 2 |
TCAACGC | 24660 | 0.0 | 31.373413 | 4 |
AACGCAG | 24800 | 0.0 | 31.354767 | 6 |
ACGCAGA | 27215 | 0.0 | 28.17553 | 7 |
CGCAGAG | 28175 | 0.0 | 27.148432 | 8 |
GTACATG | 27425 | 0.0 | 26.836168 | 1 |
TACATGG | 28420 | 0.0 | 25.771893 | 2 |
ACATGGG | 28045 | 0.0 | 25.239256 | 3 |
GTACTAG | 3345 | 0.0 | 25.16574 | 1 |
GTGGTAT | 4365 | 0.0 | 24.887457 | 1 |
GCAGAGT | 31335 | 0.0 | 24.069082 | 9 |
CATGGGG | 21920 | 0.0 | 23.287039 | 4 |
ATGGGGG | 15465 | 0.0 | 21.883793 | 5 |
GAGTACT | 15725 | 0.0 | 21.532524 | 12-13 |
CAGAGTA | 30435 | 0.0 | 20.559828 | 10-11 |
GCATCGT | 3690 | 0.0 | 20.118008 | 8 |