Basic Statistics
Measure | Value |
---|---|
Filename | ERR1211545_1.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 3842823 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 42 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 16534 | 0.4302566108301111 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 15611 | 0.4062378100682753 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 10681 | 0.27794670740754907 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 8655 | 0.0 | 48.40745 | 1 |
TACCTGG | 3725 | 0.0 | 39.636868 | 2 |
GTACCTG | 4030 | 0.0 | 37.454292 | 1 |
GTATCAA | 14110 | 0.0 | 35.224884 | 1 |
ACCTGGG | 4285 | 0.0 | 33.669353 | 3 |
TCAACGC | 17525 | 0.0 | 28.022411 | 4 |
ATCAACG | 17535 | 0.0 | 27.95283 | 3 |
CAACGCA | 17805 | 0.0 | 27.713703 | 5 |
TAACGCA | 360 | 0.0 | 27.413473 | 4 |
AACGCAG | 18350 | 0.0 | 27.095127 | 6 |
TATAACG | 365 | 0.0 | 27.053432 | 2 |
TATCAAC | 18405 | 0.0 | 26.723408 | 2 |
ACGCAGA | 20495 | 0.0 | 24.213501 | 7 |
TATCACG | 235 | 2.0008883E-10 | 24.01095 | 2 |
GTACATG | 14780 | 0.0 | 23.924618 | 1 |
CGCAGAG | 20810 | 0.0 | 23.8244 | 8 |
TACATGG | 14895 | 0.0 | 23.076653 | 2 |
ACATGGG | 14640 | 0.0 | 22.50216 | 3 |
GCAGAGT | 22875 | 0.0 | 21.303629 | 9 |
GAGTACT | 14320 | 0.0 | 21.151367 | 12-13 |