Basic Statistics
Measure | Value |
---|---|
Filename | ERR1211260_2.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 11312324 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 45 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 38676 | 0.34189261198671467 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 30292 | 0.26777875174013754 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 17995 | 0.1590742980841072 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 22340 | 0.0 | 47.336414 | 1 |
GTATCAA | 40475 | 0.0 | 40.475533 | 1 |
GTACTAG | 12610 | 0.0 | 35.7541 | 1 |
GTGGTAT | 6115 | 0.0 | 35.55666 | 1 |
GGGCACC | 11770 | 0.0 | 35.018772 | 94 |
CAACGCA | 44640 | 0.0 | 34.80351 | 5 |
ATCAACG | 45435 | 0.0 | 34.215073 | 3 |
GCATCGT | 12150 | 0.0 | 33.46498 | 8 |
TATCAAC | 50615 | 0.0 | 32.162273 | 2 |
TAGGCAT | 15485 | 0.0 | 31.268118 | 5 |
AACGCAG | 51600 | 0.0 | 30.99304 | 6 |
CTGTGCG | 15845 | 0.0 | 30.496752 | 9 |
TAGTACT | 16850 | 0.0 | 28.818691 | 4 |
ACTGTGC | 17450 | 0.0 | 28.79606 | 8 |
CTAGGCA | 17190 | 0.0 | 28.768267 | 4 |
TCAACGC | 55240 | 0.0 | 28.567451 | 4 |
ACGCAGA | 54720 | 0.0 | 28.392588 | 7 |
TATCCGC | 450 | 0.0 | 28.23753 | 1 |
CGCAGAG | 55015 | 0.0 | 28.229925 | 8 |
TACCTGG | 4525 | 0.0 | 27.249474 | 2 |