Basic Statistics
Measure | Value |
---|---|
Filename | ERR1211242_1.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 11657234 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 45 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 26861 | 0.23042344350297847 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 22514 | 0.19313329388429537 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 12977 | 0.11132143354075247 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 21280 | 0.0 | 44.82934 | 1 |
GTATCAA | 36110 | 0.0 | 37.017006 | 1 |
GGGCACC | 12260 | 0.0 | 35.774086 | 94 |
GTACTAG | 11645 | 0.0 | 33.914993 | 1 |
CAACGCA | 39880 | 0.0 | 31.77647 | 5 |
ATCAACG | 40170 | 0.0 | 31.566887 | 3 |
CTGTGCG | 15980 | 0.0 | 30.550127 | 9 |
TATCAAC | 45470 | 0.0 | 29.351547 | 2 |
TAGGCAT | 14630 | 0.0 | 28.776867 | 5 |
AACGCAG | 46255 | 0.0 | 28.32135 | 6 |
TAGTACT | 17605 | 0.0 | 28.164888 | 4 |
GTGGTAT | 6640 | 0.0 | 27.898449 | 1 |
ACTGTGC | 18375 | 0.0 | 27.87234 | 8 |
GTACTGT | 19000 | 0.0 | 26.83218 | 6 |
TACCTGG | 5790 | 0.0 | 26.702684 | 2 |
GCATCGT | 13945 | 0.0 | 26.247818 | 8 |
CTAACGC | 5805 | 0.0 | 26.232182 | 3 |
CTAGGCA | 16710 | 0.0 | 26.101362 | 4 |
CTAGTAC | 19985 | 0.0 | 26.010136 | 3 |
TCAACGC | 49665 | 0.0 | 25.986137 | 4 |