Basic Statistics
Measure | Value |
---|---|
Filename | ERR489033_2.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 10053178 |
Sequences flagged as poor quality | 0 |
Sequence length | 75 |
%GC | 46 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GAGTAAGCAGTGGTATCAACGCAGAGTAAGCAGTGGTATCAACGCAGAGTAAGCAGTGGTATCAACGCAGAGTAA | 41591 | 0.4137099731050221 | No Hit |
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 26031 | 0.2589330458487853 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 17865 | 0.17770500034914333 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 12701 | 0.1263381589383974 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TACCTGG | 14380 | 0.0 | 24.851833 | 2 |
GTACCTG | 15040 | 0.0 | 23.966125 | 1 |
ACCTGGG | 14935 | 0.0 | 22.885593 | 3 |
GAGTACT | 43725 | 0.0 | 21.250912 | 12 |
AGTACTT | 44735 | 0.0 | 20.78737 | 13 |
GTACATG | 63430 | 0.0 | 20.600977 | 1 |
TACATGG | 64300 | 0.0 | 20.041597 | 2 |
GTACTTT | 46845 | 0.0 | 19.740658 | 14 |
CATGGGT | 11270 | 0.0 | 19.340347 | 4 |
ACATGGG | 65100 | 0.0 | 19.3008 | 3 |
AGAGTAC | 79730 | 0.0 | 18.970806 | 11 |
TACTTTT | 50815 | 0.0 | 18.20785 | 15 |
GTATCAA | 92505 | 0.0 | 18.180155 | 1 |
ACTTTTT | 51695 | 0.0 | 18.117317 | 16 |
GTATAGG | 2325 | 0.0 | 17.92283 | 1 |
GGGTACC | 5845 | 0.0 | 17.51629 | 7 |
GGTACCT | 5880 | 0.0 | 17.471794 | 8 |
TACCCGG | 1210 | 0.0 | 17.440603 | 2 |
CATGGGG | 33810 | 0.0 | 17.43701 | 4 |
ATGGGTA | 7300 | 0.0 | 17.148743 | 5 |