Basic Statistics
Measure | Value |
---|---|
Filename | DRR025050_1.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 2397452 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 43 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 8085 | 0.3372330290658582 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 6930 | 0.2890568820564499 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 4695 | 0.19583290927201047 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 5060 | 0.0 | 47.69043 | 1 |
GTATCAA | 9090 | 0.0 | 38.449383 | 1 |
ATCAACG | 11225 | 0.0 | 30.569176 | 3 |
TCAACGC | 11350 | 0.0 | 30.18543 | 4 |
TATCAAC | 11670 | 0.0 | 29.484684 | 2 |
CAACGCA | 11770 | 0.0 | 29.188148 | 5 |
AACGCAG | 12135 | 0.0 | 28.34895 | 6 |
TACCTGG | 2160 | 0.0 | 27.420355 | 2 |
GTACCTG | 2300 | 0.0 | 26.996687 | 1 |
TAACGCA | 210 | 4.9112714E-11 | 26.855154 | 4 |
TATAACG | 235 | 7.2759576E-12 | 26.003496 | 2 |
ACGCAGA | 13490 | 0.0 | 25.396933 | 7 |
CGCAGAG | 13520 | 0.0 | 24.991928 | 8 |
ATAACGC | 320 | 0.0 | 24.971588 | 3 |
GTCTCGC | 730 | 0.0 | 23.842031 | 1 |
GTACATG | 6150 | 0.0 | 23.787546 | 1 |
ACAACGC | 435 | 0.0 | 23.772816 | 3 |
GCAGAGT | 14260 | 0.0 | 23.101812 | 9 |
TACATGG | 6235 | 0.0 | 22.240358 | 2 |
AGAGTAC | 12565 | 0.0 | 22.010582 | 10-11 |