Basic Statistics
Measure | Value |
---|---|
Filename | DRR025048_2.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 3600461 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 42 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 20608 | 0.5723711491389575 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 15752 | 0.43749953131001834 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 10815 | 0.300378201569188 | No Hit |
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 4969 | 0.13801010481713313 | No Hit |
GTGGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 4151 | 0.11529079192914463 | No Hit |
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 4074 | 0.11315217690179118 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 9715 | 0.0 | 60.15238 | 1 |
GTATCAA | 19420 | 0.0 | 43.430786 | 1 |
TACCTGG | 3170 | 0.0 | 40.339275 | 2 |
ACCTGGG | 3590 | 0.0 | 35.224113 | 3 |
ATCAACG | 24605 | 0.0 | 34.084248 | 3 |
TCAACGC | 25040 | 0.0 | 33.56536 | 4 |
TATCAAC | 25890 | 0.0 | 32.558674 | 2 |
CAACGCA | 26160 | 0.0 | 32.32507 | 5 |
GTACCTG | 4155 | 0.0 | 31.79507 | 1 |
GTACCGG | 345 | 0.0 | 31.342472 | 1 |
AACGCAG | 27300 | 0.0 | 31.128033 | 6 |
GTGGTAT | 3605 | 0.0 | 31.038174 | 1 |
TGGTATC | 3630 | 0.0 | 30.564959 | 2 |
TACAACG | 785 | 0.0 | 30.543512 | 2 |
GTACATG | 21360 | 0.0 | 28.173008 | 1 |
ACGCAGA | 29910 | 0.0 | 28.017715 | 7 |
CGCAGAG | 29735 | 0.0 | 27.992544 | 8 |
TACATGG | 20825 | 0.0 | 27.654736 | 2 |
GCAGAGT | 30905 | 0.0 | 26.338972 | 9 |
ACATGGG | 22130 | 0.0 | 25.193327 | 3 |