Basic Statistics
Measure | Value |
---|---|
Filename | DRR025029_2.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 4780995 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 44 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 11856 | 0.24798185314981505 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 10101 | 0.2112740130454016 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 5950 | 0.12445108183547567 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 9970 | 0.0 | 46.40506 | 1 |
GTATCAA | 16860 | 0.0 | 37.703747 | 1 |
ATCAACG | 20625 | 0.0 | 30.337925 | 3 |
TCAACGC | 20815 | 0.0 | 30.104595 | 4 |
TATCAAC | 21605 | 0.0 | 29.073637 | 2 |
CAACGCA | 21975 | 0.0 | 28.407604 | 5 |
AACGCAG | 23155 | 0.0 | 27.120066 | 6 |
GTACATG | 18720 | 0.0 | 26.297 | 1 |
TACATGG | 18790 | 0.0 | 24.821733 | 2 |
ACGCAGA | 25415 | 0.0 | 24.447735 | 7 |
CGCAGAG | 25630 | 0.0 | 24.021593 | 8 |
GTGGTAT | 5075 | 0.0 | 23.439583 | 1 |
ACATGGG | 19110 | 0.0 | 23.419521 | 3 |
GCAGAGT | 27310 | 0.0 | 21.958544 | 9 |
TGGTATC | 5470 | 0.0 | 20.628664 | 2 |
GAGTACT | 15640 | 0.0 | 20.1479 | 12-13 |
AGAGTAC | 24360 | 0.0 | 19.756021 | 10-11 |
TACCTGG | 3640 | 0.0 | 19.374794 | 2 |
CATGGGG | 10715 | 0.0 | 19.259785 | 4 |
CAGAGTA | 26670 | 0.0 | 19.093378 | 10-11 |