Basic Statistics
Measure | Value |
---|---|
Filename | DRR025025_1.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 3268518 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 44 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 9086 | 0.27798531322146613 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 7662 | 0.23441816749976596 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 5430 | 0.16613033796968535 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 5450 | 0.0 | 55.323677 | 1 |
GTATCAA | 9935 | 0.0 | 40.812096 | 1 |
TATAACG | 340 | 0.0 | 40.101673 | 2 |
TACCTGG | 3555 | 0.0 | 39.41124 | 2 |
ACAACGC | 590 | 0.0 | 34.265717 | 3 |
GTACCTG | 4130 | 0.0 | 34.054195 | 1 |
ATAACGC | 425 | 0.0 | 32.081337 | 3 |
ATCAACG | 13005 | 0.0 | 30.801556 | 3 |
TAACGCA | 460 | 0.0 | 30.654003 | 4 |
TCAACGC | 13080 | 0.0 | 30.580574 | 4 |
TCTGTCG | 1150 | 0.0 | 29.832 | 8 |
TATCAAC | 13550 | 0.0 | 29.770863 | 2 |
CAACGCA | 13665 | 0.0 | 29.443398 | 5 |
GTCTCGC | 1110 | 0.0 | 28.816116 | 1 |
TGGTATC | 2350 | 0.0 | 28.009386 | 2 |
AACGCAG | 14505 | 0.0 | 27.900324 | 6 |
GTGGTAT | 2515 | 0.0 | 27.119366 | 1 |
GTACCGG | 310 | 0.0 | 25.795074 | 1 |
ACCTGGG | 5330 | 0.0 | 25.580805 | 3 |
ACGCAGA | 16010 | 0.0 | 25.040806 | 7 |