FastQCFastQC Report
Thu 2 Jun 2016
DRR025024_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameDRR025024_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3404180
Sequences flagged as poor quality0
Sequence length100
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT246600.7244035274280444No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT198870.5841935502823No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT150570.44230916109018914No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT61550.18080712535764853No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA61470.1805721201581585No Hit
GTGGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT51990.1527240040185889No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT41070.12064579428819862No Hit
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT39640.1164450763473142No Hit

[WARN]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGTATCA127600.048.983481
TACCTGG34450.044.6200072
TATAACG5250.040.2925072
GTATCAA226900.040.0864221
ACCTGGG42650.034.9390683
TACAACG9850.033.8838842
GTACCTG47300.032.5133671
ACAACGC10700.032.0708273
ATAACGC6900.032.019893
ATCAACG294050.030.6139033
TCAACGC297950.030.1600914
TATCAAC302750.029.7962722
CAACGCA308900.029.1518235
TAACGCA7100.029.1261084
AACGCAG321400.028.178076
GTATAAC10350.027.2637921
GTACAAC14600.025.1256351
ACGCAGA358550.025.1008287
CGCAGAG358700.025.0113538
GTGGTAT59650.024.5991131