FastQCFastQC Report
Thu 2 Jun 2016
DRR025017_2.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameDRR025017_2.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3584033
Sequences flagged as poor quality0
Sequence length100
%GC43

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT115270.32162092257521063No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT99770.27837355292208527No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT59480.16595829335276768No Hit

[WARN]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGTATCA76100.047.5150761
GTATCAA130400.037.501231
ATCAACG157600.030.546453
TCAACGC159250.030.2282684
TATCAAC164550.029.3738422
CAACGCA167300.028.8576665
AACGCAG176450.027.3836576
GTACATG118950.026.9198361
GTGGTAT38400.026.4491861
TACATGG119750.025.8747022
TGGTATC38250.025.3221932
ACGCAGA193050.024.7104077
ACATGGG124350.024.3854583
CGCAGAG194100.024.3577948
GCAGAGT206850.022.3792869
TACCTGG26950.020.412332
AGAGTAC184900.020.30838410-11
GAGTACT137300.020.16063312-13
GAGTACA90700.019.6481511
CAGAGTA201550.019.57507310-11