Basic Statistics
Measure | Value |
---|---|
Filename | DRR025017_2.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 3584033 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 43 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 11527 | 0.32162092257521063 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 9977 | 0.27837355292208527 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 5948 | 0.16595829335276768 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 7610 | 0.0 | 47.515076 | 1 |
GTATCAA | 13040 | 0.0 | 37.50123 | 1 |
ATCAACG | 15760 | 0.0 | 30.54645 | 3 |
TCAACGC | 15925 | 0.0 | 30.228268 | 4 |
TATCAAC | 16455 | 0.0 | 29.373842 | 2 |
CAACGCA | 16730 | 0.0 | 28.857666 | 5 |
AACGCAG | 17645 | 0.0 | 27.383657 | 6 |
GTACATG | 11895 | 0.0 | 26.919836 | 1 |
GTGGTAT | 3840 | 0.0 | 26.449186 | 1 |
TACATGG | 11975 | 0.0 | 25.874702 | 2 |
TGGTATC | 3825 | 0.0 | 25.322193 | 2 |
ACGCAGA | 19305 | 0.0 | 24.710407 | 7 |
ACATGGG | 12435 | 0.0 | 24.385458 | 3 |
CGCAGAG | 19410 | 0.0 | 24.357794 | 8 |
GCAGAGT | 20685 | 0.0 | 22.379286 | 9 |
TACCTGG | 2695 | 0.0 | 20.41233 | 2 |
AGAGTAC | 18490 | 0.0 | 20.308384 | 10-11 |
GAGTACT | 13730 | 0.0 | 20.160633 | 12-13 |
GAGTACA | 9070 | 0.0 | 19.648151 | 1 |
CAGAGTA | 20155 | 0.0 | 19.575073 | 10-11 |