Basic Statistics
Measure | Value |
---|---|
Filename | DRR025015_2.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 7842844 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 47 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 15188 | 0.19365424073206097 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 12042 | 0.1535412409069975 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 12735 | 0.0 | 52.532825 | 1 |
GTATCAA | 23770 | 0.0 | 43.374477 | 1 |
ATCAACG | 30345 | 0.0 | 33.9423 | 3 |
TCAACGC | 30730 | 0.0 | 33.547646 | 4 |
TATCAAC | 32565 | 0.0 | 31.587114 | 2 |
CAACGCA | 34865 | 0.0 | 29.56851 | 5 |
AACGCAG | 36125 | 0.0 | 28.57277 | 6 |
ACGCAGA | 37955 | 0.0 | 27.006964 | 7 |
CGCAGAG | 39270 | 0.0 | 26.006361 | 8 |
GTGGTAT | 5635 | 0.0 | 24.946064 | 1 |
GTACATG | 37770 | 0.0 | 24.80762 | 1 |
GCAGAGT | 41130 | 0.0 | 24.28165 | 9 |
TACATGG | 36520 | 0.0 | 24.188543 | 2 |
ACATGGG | 38755 | 0.0 | 22.24629 | 3 |
TGGTATC | 6160 | 0.0 | 21.979889 | 2 |
AGAGTAC | 39535 | 0.0 | 19.846506 | 10-11 |
CAGAGTA | 40930 | 0.0 | 19.767178 | 10-11 |
CATGGGG | 25260 | 0.0 | 19.652445 | 4 |
GTACTTT | 20860 | 0.0 | 18.801035 | 14-15 |
AGTACTT | 21650 | 0.0 | 18.147264 | 12-13 |