Basic Statistics
Measure | Value |
---|---|
Filename | DRR025010_2.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 3176458 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 42 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 8782 | 0.27647146601655054 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 7342 | 0.23113795302818424 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 4642 | 0.14613761617499743 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 4905 | 0.0 | 57.42197 | 1 |
GTATCAA | 9705 | 0.0 | 45.20395 | 1 |
ATCAACG | 12360 | 0.0 | 35.072094 | 3 |
TCAACGC | 12560 | 0.0 | 34.624287 | 4 |
TATCAAC | 12845 | 0.0 | 33.859787 | 2 |
CAACGCA | 13240 | 0.0 | 32.737926 | 5 |
AACGCAG | 13870 | 0.0 | 31.481232 | 6 |
GTGGTAT | 2010 | 0.0 | 29.709677 | 1 |
ACGCAGA | 15195 | 0.0 | 28.300797 | 7 |
CGCAGAG | 15170 | 0.0 | 28.254496 | 8 |
CGCGCGA | 35 | 0.008843635 | 26.854242 | 90-91 |
TGGTATC | 2250 | 0.0 | 25.703909 | 2 |
GCAGAGT | 16350 | 0.0 | 25.669178 | 9 |
GTACATG | 8405 | 0.0 | 23.608316 | 1 |
TACATGG | 8325 | 0.0 | 22.987238 | 2 |
AGAGTAC | 15640 | 0.0 | 21.425335 | 10-11 |
ACATGGG | 8575 | 0.0 | 20.999737 | 3 |
CAGAGTA | 16300 | 0.0 | 20.802887 | 10-11 |
GTACCTG | 2510 | 0.0 | 20.606737 | 1 |
TACCTGG | 2405 | 0.0 | 20.528198 | 2 |