Basic Statistics
Measure | Value |
---|---|
Filename | DRR024987_1.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 3100819 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 44 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 15381 | 0.49603024233275145 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 13118 | 0.4230495233678586 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 9283 | 0.29937252061471503 | No Hit |
GTGGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 3505 | 0.1130346531029383 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 8490 | 0.0 | 53.349888 | 1 |
GTATCAA | 14890 | 0.0 | 40.716755 | 1 |
ATCAACG | 19620 | 0.0 | 30.8139 | 3 |
TCAACGC | 19885 | 0.0 | 30.465336 | 4 |
TATCAAC | 20180 | 0.0 | 29.983555 | 2 |
CAACGCA | 20760 | 0.0 | 29.203909 | 5 |
AACGCAG | 21440 | 0.0 | 28.299585 | 6 |
TATAACG | 285 | 0.0 | 28.043344 | 2 |
TACCTGG | 2525 | 0.0 | 26.439468 | 2 |
ACGCAGA | 24385 | 0.0 | 24.630472 | 7 |
GTGGTAT | 3560 | 0.0 | 24.309875 | 1 |
CGCAGAG | 24665 | 0.0 | 24.293701 | 8 |
GTACATG | 16970 | 0.0 | 23.946764 | 1 |
TACATGG | 17030 | 0.0 | 23.493116 | 2 |
GCAGAGT | 25820 | 0.0 | 22.861147 | 9 |
ACATGGG | 17445 | 0.0 | 22.205519 | 3 |
TACAACG | 675 | 0.0 | 21.591541 | 2 |
GTACCTG | 3280 | 0.0 | 21.222805 | 1 |
AGTACTT | 15690 | 0.0 | 20.89262 | 12-13 |
GAGTACT | 15730 | 0.0 | 20.85443 | 12-13 |