Basic Statistics
Measure | Value |
---|---|
Filename | DRR024977_1.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 8462738 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 48 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 17805 | 0.21039290120998663 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 14792 | 0.17478976662163 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 9580 | 0.11320213387204 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 15710 | 0.0 | 46.88655 | 1 |
GTATCAA | 26790 | 0.0 | 41.5759 | 1 |
ATCAACG | 36195 | 0.0 | 30.468622 | 3 |
TCAACGC | 36470 | 0.0 | 30.258753 | 4 |
TATCAAC | 37550 | 0.0 | 29.570683 | 2 |
CAACGCA | 39485 | 0.0 | 27.995865 | 5 |
AACGCAG | 40910 | 0.0 | 27.009047 | 6 |
ACGCAGA | 44610 | 0.0 | 24.409529 | 7 |
CGCAGAG | 46140 | 0.0 | 23.498117 | 8 |
GTACATG | 38630 | 0.0 | 23.231987 | 1 |
GCAGAGT | 48025 | 0.0 | 22.00836 | 9 |
TACATGG | 38905 | 0.0 | 21.967457 | 2 |
ACATGGG | 41035 | 0.0 | 20.322289 | 3 |
GTGGTAT | 8105 | 0.0 | 19.789465 | 1 |
AGAGTAC | 44340 | 0.0 | 19.55538 | 10-11 |
AGTACTT | 25600 | 0.0 | 18.826199 | 12-13 |
GTACTTT | 25105 | 0.0 | 18.68265 | 14-15 |
GAGTACT | 25530 | 0.0 | 18.666119 | 12-13 |
CAGAGTA | 46925 | 0.0 | 18.45308 | 10-11 |
GAGTACA | 28990 | 0.0 | 17.652792 | 1 |