Basic Statistics
Measure | Value |
---|---|
Filename | DRR024966_2.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 5389365 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 44 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 12791 | 0.23733779397016158 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 10483 | 0.19451271160888156 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 6578 | 0.12205519574198444 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 8975 | 0.0 | 54.32278 | 1 |
GTATCAA | 17405 | 0.0 | 42.976772 | 1 |
ATCAACG | 22000 | 0.0 | 33.39623 | 3 |
TCAACGC | 22410 | 0.0 | 32.825962 | 4 |
TATCAAC | 23180 | 0.0 | 31.924858 | 2 |
CAACGCA | 23460 | 0.0 | 31.37768 | 5 |
AACGCAG | 24700 | 0.0 | 29.896767 | 6 |
ACGCAGA | 27250 | 0.0 | 26.770847 | 7 |
CGCAGAG | 27285 | 0.0 | 26.61567 | 8 |
GTGGTAT | 4325 | 0.0 | 26.089321 | 1 |
TGGTATC | 4155 | 0.0 | 25.912071 | 2 |
GTACATG | 20885 | 0.0 | 25.798105 | 1 |
TACATGG | 20510 | 0.0 | 24.733948 | 2 |
CGTACCG | 115 | 1.3768543E-4 | 24.525084 | 5 |
GCAGAGT | 29350 | 0.0 | 24.118467 | 9 |
ACATGGG | 20800 | 0.0 | 23.61642 | 3 |
AGAGTAC | 27370 | 0.0 | 21.054285 | 10-11 |
CATGGGG | 11715 | 0.0 | 20.142178 | 4 |
AGTACTT | 18090 | 0.0 | 20.056688 | 12-13 |
GAGTACT | 17665 | 0.0 | 19.993822 | 12-13 |