Basic Statistics
Measure | Value |
---|---|
Filename | DRR024953_2.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 3258263 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 43 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 8807 | 0.27029739465475927 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 7544 | 0.2315344095918592 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 4531 | 0.13906182527315933 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 7275 | 0.0 | 40.454895 | 1 |
ACAACGC | 695 | 0.0 | 35.170753 | 3 |
GTATCAA | 11735 | 0.0 | 35.095448 | 1 |
TACCTGG | 3115 | 0.0 | 33.80802 | 2 |
GTACCTG | 3385 | 0.0 | 32.36138 | 1 |
TAGACCG | 120 | 1.651697E-7 | 31.338041 | 5 |
ATCAACG | 14095 | 0.0 | 28.547743 | 3 |
TCAACGC | 14185 | 0.0 | 28.498732 | 4 |
TACAACG | 840 | 0.0 | 27.984688 | 2 |
TATCAAC | 14700 | 0.0 | 27.632881 | 2 |
CAACGCA | 14805 | 0.0 | 27.400942 | 5 |
AACGCAG | 15370 | 0.0 | 26.606953 | 6 |
TATAACG | 395 | 0.0 | 26.185167 | 2 |
ATAACGC | 395 | 0.0 | 26.181147 | 3 |
GTCTCGC | 1070 | 0.0 | 25.92376 | 1 |
TCTGTCG | 1075 | 0.0 | 24.923529 | 8 |
GTACATG | 8345 | 0.0 | 24.450804 | 1 |
GTACAAC | 1125 | 0.0 | 24.23847 | 1 |
ACGCAGA | 17175 | 0.0 | 23.509651 | 7 |
CGCAGAG | 17085 | 0.0 | 23.46806 | 8 |