Basic Statistics
Measure | Value |
---|---|
Filename | DRR024939_2.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 3042344 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 44 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 7252 | 0.23836883666015413 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 6061 | 0.19922138982311008 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 3938 | 0.12943966888688457 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 4800 | 0.0 | 51.915195 | 1 |
TACCTGG | 3355 | 0.0 | 42.743214 | 2 |
GTATCAA | 8745 | 0.0 | 41.452854 | 1 |
GTACCTG | 3665 | 0.0 | 40.154133 | 1 |
TATAACG | 340 | 0.0 | 40.103195 | 2 |
ATAACGC | 335 | 0.0 | 37.88663 | 3 |
TCTGTCG | 1190 | 0.0 | 35.552464 | 8 |
ATCAACG | 10840 | 0.0 | 32.827187 | 3 |
TCAACGC | 11020 | 0.0 | 32.29046 | 4 |
TATCAAC | 11345 | 0.0 | 31.621315 | 2 |
CAACGCA | 11535 | 0.0 | 31.013842 | 5 |
CTGTCGC | 1425 | 0.0 | 30.679075 | 9 |
TAACGCA | 445 | 0.0 | 30.63359 | 4 |
ACAACGC | 630 | 0.0 | 30.592173 | 3 |
AACGCAG | 12220 | 0.0 | 29.312845 | 6 |
ACCTGGG | 5030 | 0.0 | 27.66246 | 3 |
GTACCGG | 280 | 0.0 | 26.867163 | 1 |
ACGCAGA | 13450 | 0.0 | 26.387537 | 7 |
CGCAGAG | 13680 | 0.0 | 25.806437 | 8 |
GTCTCGC | 1095 | 0.0 | 25.763035 | 1 |